3OIT | pdb_00003oit

Crystal structure of curcuminoid synthase CUS from Oryza sativa

PDB DOI: https://doi.org/10.2210/pdb3OIT/pdb

Classification: TRANSFERASE
Organism(s): Oryza sativa Japonica Group
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-08-19 Released: 2010-10-20
Deposition Author(s): Miyazono, K., Um, J., Imai, F.L., Katsuyama, Y., Ohnishi, Y., Horinouchi, S., Tanokura, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.225 (Depositor), 0.220 (DCC)
R-Value Work:
0.195 (Depositor)
R-Value Observed:
0.197 (Depositor)

Starting Model: experimental
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This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of curcuminoid synthase CUS from Oryza sativa

Miyazono, K., Um, J., Imai, F.L., Katsuyama, Y., Ohnishi, Y., Horinouchi, S., Tanokura, M.

(2011) Proteins 79: 669-673

PubMed: 21117241 Search on PubMed
DOI: https://doi.org/10.1002/prot.22888
Primary Citation Related Structures:
3OIT

Organizational Affiliation

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-Ku, Tokyo 113-8657, Japan.

Macromolecule Content

Total Structure Weight: 83.61 kDa
Atom Count: 6,036
Modeled Residue Count: 739
Deposited Residue Count: 774
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Os07g0271500 protein	A, B	387	Oryza sativa Japonica Group	Mutation(s): 0 Gene Names: OJ1001_C01.122, OSJNBb0002J01.6, Os07g0271500 EC: 2.3.1.211
UniProt
Find proteins for Q8LIL0 (Oryza sativa subsp. japonica) Explore Q8LIL0 Go to UniProtKB: Q8LIL0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8LIL0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.225 (Depositor), 0.220 (DCC)
R-Value Work: 0.195 (Depositor)
R-Value Observed: 0.197 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.78	α = 90
b = 68.51	β = 90
c = 211.72	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-10-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-10-20
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2014-02-26
Changes: Database references
Version 1.3: 2023-11-01
Changes: Data collection, Database references, Refinement description
Version 1.4: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.