3OHS

Crystal Structure of Mammalian Dimeric Dihydrodiol Dehydrogenase in complex with Dihydroxyacetone


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.163 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of MDD in complex with Dihydroxyacetone

Zhao, H.-T.El-Kabbani, O.Hara, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenaseA [auth X]334Macaca fascicularisMutation(s): 0 
Gene Names: DHDH2DD
EC: 1.3.1.20 (PDB Primary Data), 1.1.1.179 (PDB Primary Data)
UniProt
Find proteins for Q9TQS6 (Macaca fascicularis)
Explore Q9TQS6 
Go to UniProtKB:  Q9TQS6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9TQS6
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
B [auth X]
C [auth X]
D [auth X]
E [auth X]
F [auth X]
B [auth X],
C [auth X],
D [auth X],
E [auth X],
F [auth X],
G [auth X],
H [auth X],
I [auth X]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
2HA
Query on 2HA

Download Ideal Coordinates CCD File 
K [auth X]Dihydroxyacetone
C3 H6 O3
RXKJFZQQPQGTFL-UHFFFAOYSA-N
BME
Query on BME

Download Ideal Coordinates CCD File 
J [auth X]BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.163 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 122.446α = 90
b = 122.446β = 90
c = 121.388γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-08-24
    Type: Initial release
  • Version 1.1: 2023-11-01
    Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary