3O3V | pdb_00003o3v

Crystal structure of ClbP peptidase domain

PDB DOI: https://doi.org/10.2210/pdb3O3V/pdb

Classification: HYDROLASE
Organism(s): Escherichia coli IHE3034
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-07-26 Released: 2011-07-27
Deposition Author(s): Dubois, D., Cougnoux, A., Delmas, J., Bonnet, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.241 (Depositor), 0.235 (DCC)
R-Value Work:
0.204 (Depositor), 0.201 (DCC)
R-Value Observed:
0.206 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3O3V

This is version 1.1 of the entry. See complete history.

Literature

ClbP x-ray structure, the prototype of a peptidase family associated to NRP production

Dubois, D., Baron, O., Cougnoux, A., Delmas, J., Pradel, N., Nougayrede, J.P., Robin, F., Oswald, E., Bonnet, R.

To be published.

Macromolecule Content

Total Structure Weight: 110.4 kDa
Atom Count: 7,968
Modeled Residue Count: 1,005
Deposited Residue Count: 1,005
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
beta-lactamase	A, B, C	335	Escherichia coli IHE3034	Mutation(s): 0 Gene Names: clbp, ECOK1_2171 EC: 3.5.2.6
UniProt
Find proteins for A0A0H2V8D3 (Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)) Explore A0A0H2V8D3 Go to UniProtKB: A0A0H2V8D3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H2V8D3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.241 (Depositor), 0.235 (DCC)
R-Value Work: 0.204 (Depositor), 0.201 (DCC)
R-Value Observed: 0.206 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.94	α = 90
b = 149.93	β = 123.9
c = 87.33	γ = 90

Software Package:

Software Name	Purpose
DNA	data collection
PHASER	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-07-27

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-07-27
Type: Initial release
Version 1.1: 2024-11-27
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.