3O22

Structure-function analysis of human L-Prostaglandin D Synthase bound with fatty acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 
    0.221 (Depositor), 0.210 (DCC) 
  • R-Value Work: 
    0.193 (Depositor), 0.190 (DCC) 
  • R-Value Observed: 
    0.194 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted OLAClick on this verticalbar to view detailsBest fitted PLMClick on this verticalbar to view details

This is version 1.3 of the entry. See complete history


Literature

Structure-function analysis of human L-Prostaglandin D Synthase bound with fatty acid

Zhou, Y.Shaw, N.Li, Y.Zhao, Y.Zhang, R.Liu, Z.-J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Prostaglandin-H2 D-isomerase162Homo sapiensMutation(s): 1 
Gene Names: PTGDSPDS
EC: 5.3.99.2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P41222 (Homo sapiens)
Explore P41222 
Go to UniProtKB:  P41222
PHAROS:  P41222
GTEx:  ENSG00000107317 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP41222
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free:  0.221 (Depositor), 0.210 (DCC) 
  • R-Value Work:  0.193 (Depositor), 0.190 (DCC) 
  • R-Value Observed: 0.194 (Depositor) 
Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.971α = 90
b = 60.971β = 90
c = 179.46γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
CNSrefinement
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
CNSphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted OLAClick on this verticalbar to view detailsBest fitted PLMClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-09-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-11-01
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.3: 2024-11-13
    Changes: Structure summary