3NO9 | pdb_00003no9

Crystal Structure of apo fumarate hydratase from Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb3NO9/pdb

Classification: LYASE
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-06-25 Released: 2010-07-14
Deposition Author(s): Li, H., Swanson, S., Yu, M., Hung, L.-W., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.48 Å
R-Value Free:
0.241 (Depositor)
R-Value Work:
0.206 (Depositor)
R-Value Observed:
0.208 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of apo fumarate hydratase from Mycobacterium tuberculosis

Li, H., Swanson, S., Yu, M., Hung, L.-H., Sacchettini, J.S.

To be published.

Macromolecule Content

Total Structure Weight: 201.12 kDa
Atom Count: 13,623
Modeled Residue Count: 1,810
Deposited Residue Count: 1,900
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fumarate hydratase class II	A, B, C, D	475	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: fum, fumC, MT1130, MTV017.51c, Rv1098c EC: 4.2.1.2
UniProt
Find proteins for P9WN93 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WN93 Go to UniProtKB: P9WN93
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P9WN93
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.48 Å
R-Value Free: 0.241 (Depositor)
R-Value Work: 0.206 (Depositor)
R-Value Observed: 0.208 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 271.224	α = 90
b = 96.555	β = 102.99
c = 89.889	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
PHENIX	refinement
HKL-2000	data collection
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-07-14

Deposition Author(s):

Sacchettini, J.C.

TB Structural Genomics Consortium (TBSGC)

Revision History (Full details and data files)

Version 1.0: 2010-07-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-09-06
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.