3NJW | pdb_00003njw

First High Resolution Crystal Structure of a Lasso Peptide

PDB DOI: https://doi.org/10.2210/pdb3NJW/pdb

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Streptomyces sp.
Expression System: Streptomyces sp.
Mutation(s): No

Deposited: 2010-06-18 Released: 2010-09-01
Deposition Author(s): Nar, H., Schmid, A., Puder, C., Potterat, O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 0.86 Å
R-Value Observed:
0.094 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3NJW

This is version 1.3 of the entry. See complete history.

Literature

High-resolution crystal structure of a lasso Peptide.

Nar, H., Schmid, A., Puder, C., Potterat, O.

(2010) ChemMedChem 5: 1689-1692

PubMed: 20665759 Search on PubMed
DOI: https://doi.org/10.1002/cmdc.201000264
Primary Citation Related Structures:
3NJW

Organizational Affiliation

Boehringer Ingelheim Pharma GmbH & Co. KG, Birkendorfer Straße 65, Germany. herbert.nar@boehringer-ingelheim.com

Macromolecule Content

Total Structure Weight: 2.06 kDa
Atom Count: 169
Modeled Residue Count: 19
Deposited Residue Count: 19
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bicyclic peptide BI-32169	A	19	Streptomyces sp.	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 0.86 Å
R-Value Observed: 0.094 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 19.465	α = 90
b = 21.432	β = 90
c = 29.523	γ = 90

Software Package:

Software Name	Purpose
StructureStudio	data collection
SHELXD	phasing
SHELXL-97	refinement
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-09-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-09-01
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2011-08-10
Changes: Atomic model, Database references
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.