3NJC | pdb_00003njc

Crystal structure of the yslB protein from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR460.

PDB DOI: https://doi.org/10.2210/pdb3NJC/pdb

Classification: structural genomics, unknown function
Organism(s): Bacillus subtilis subsp. subtilis str. 168
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-06-17 Released: 2010-09-22
Deposition Author(s): Vorobiev, S., Abashidze, M., Seetharaman, J., Wang, D., Cunningham, K., Ma, L.-C., Owens, L., Fang, Y., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free:
0.228 (Depositor), 0.226 (DCC)
R-Value Work:
0.185 (Depositor), 0.182 (DCC)
R-Value Observed:
0.188 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the yslB protein from Bacillus subtilis.

Vorobiev, S., Abashidze, M., Seetharaman, J., Wang, D., Cunningham, K., Ma, L.-C., Owens, L., Fang, Y., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 37.85 kDa
Atom Count: 2,631
Modeled Residue Count: 299
Deposited Residue Count: 316
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
YSLB protein	A, B	158	Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0 Gene Names: BSU28460, yslB
UniProt
Find proteins for P42955 (Bacillus subtilis (strain 168)) Explore P42955 Go to UniProtKB: P42955
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P42955
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free: 0.228 (Depositor), 0.226 (DCC)
R-Value Work: 0.185 (Depositor), 0.182 (DCC)
R-Value Observed: 0.188 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.827	α = 90
b = 52.105	β = 90
c = 136.868	γ = 90

Software Package:

Software Name	Purpose
SHELXDE	phasing
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-09-22

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2010-09-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-25
Changes: Author supporting evidence
Version 1.3: 2018-01-24
Changes: Structure summary
Version 1.4: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary