3MOW

Crystal structure of SHP2 in complex with a tautomycetin analog TTN D-1

• PDB DOI: https://doi.org/10.2210/pdb3MOW/pdb

• Classification: HYDROLASE/HYDROLASE INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2010-04-23 Released: 2011-05-04 
• Deposition Author(s): Zhang, Z.-Y., Liu, S., Yu, Z., Yu, X.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.222 
• R-Value Work: 0.170 
• R-Value Observed: 0.170 

Starting Model: experimental

Literature

Crystal structure of SHP2 in complex with a tautomycetin analog TTN D-1

Zhang, Z.-Y., Liu, S., Yu, Z., Yu, X., Huang, S.-X., Luo, Y., Wu, L., Yang, Z., Wang, L., Gunawan, A.M., Chan, R.J., Shen, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 32.93 kDa 
• Atom Count: 2,271 
• Modelled Residue Count: 254 
• Deposited Residue Count: 276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine-protein phosphatase non-receptor type 11	A	276	Homo sapiens	Mutation(s): 0  Gene Names: PTP2C, PTPN11, SHPTP2 EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q06124 (Homo sapiens) Explore Q06124  Go to UniProtKB:  Q06124
GTEx:  ENSG00000179295

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
B2B	B [auth A]	(2Z)-2-[(1R)-3-{[(1R,2S,3R,6S,7S,10S,12S,15E,17E)-18-carboxy-16-ethyl-3,7-dihydroxy-1,2,6,10,12-pentamethyl-5-oxooctade ca-15,17-dien-1-yl]oxy}-1-hydroxy-3-oxopropyl]-3-methylbut-2-enedioic acid C34 H54 O12 AJNPGMLYFPAQEA-YYTMOYMQSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.222 
• R-Value Work: 0.170 
• R-Value Observed: 0.170 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.542	α = 90
b = 75.977	β = 98.86
c = 48.376	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
CNS	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-05-04 
Deposition Author(s): Zhang, Z.-Y., Liu, S., Yu, Z., Yu, X.

Revision History  

• Version 1.0: 2011-05-04
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-09-06
  Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary