3MOI | pdb_00003moi

The crystal structure of the putative dehydrogenase from Bordetella bronchiseptica RB50

PDB DOI: https://doi.org/10.2210/pdb3MOI/pdb

Classification: OXIDOREDUCTASE
Organism(s): Bordetella bronchiseptica
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2010-04-22 Released: 2010-05-26
Deposition Author(s): Zhang, R., Evdokimova, E., Egorova, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.236 (Depositor), 0.229 (DCC)
R-Value Work:
0.197 (Depositor), 0.198 (DCC)
R-Value Observed:
0.199 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3MOI

This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of the putative dehydrogenase from Bordetella bronchiseptica RB50

Zhang, R., Evdokimova, E., Egorova, O., Savchenko, A., Edwards, A., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 42.63 kDa
Atom Count: 2,979
Modeled Residue Count: 381
Deposited Residue Count: 387
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable dehydrogenase	A	387	Bordetella bronchiseptica	Mutation(s): 0 Gene Names: BB4777, GI:33603750
UniProt
Find proteins for A0A0H3LRN8 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3LRN8 Go to UniProtKB: A0A0H3LRN8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H3LRN8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.236 (Depositor), 0.229 (DCC)
R-Value Work: 0.197 (Depositor), 0.198 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.634	α = 90
b = 122.634	β = 90
c = 79.419	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-05-26

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2010-05-26
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.