3MC0 | pdb_00003mc0

Crystal Structure of Staphylococcal Enterotoxin G (SEG) in Complex with a Mouse T-cell Receptor beta Chain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.211 (Depositor), 0.206 (DCC) 
  • R-Value Work: 
    0.179 (Depositor), 0.176 (DCC) 
  • R-Value Observed: 
    0.180 (Depositor) 

Starting Model: experimental
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This is version 1.3 of the entry. See complete history

Literature

Crystal structure of staphylococcal enterotoxin G (SEG) in complex with a mouse T-cell receptor {beta} chain.

Fernandez, M.M.Cho, S.De Marzi, M.C.Kerzic, M.C.Robinson, H.Mariuzza, R.A.Malchiodi, E.L.

(2011) J Biological Chem 286: 1189-1195

  • DOI: https://doi.org/10.1074/jbc.M110.142471
  • Primary Citation Related Structures: 
    3MC0, 3OWE

  • PubMed Abstract: 

    Superantigens (SAgs) are bacterial or viral toxins that bind MHC class II (MHC-II) molecules and T-cell receptor (TCR) in a nonconventional manner, inducing T-cell activation that leads to inflammatory cytokine production, which may result in acute toxic shock. In addition, the emerging threat of purpura fulminans and community-associated meticillin-resistant Staphylococcus aureus emphasizes the importance of a better characterization of SAg binding to their natural ligands that may allow the development of reagents to neutralize their action. The three-dimensional structure of the complex between a mouse TCR β chain (mVβ8.2) and staphylococcal enterotoxin G (SEG) at 2.0 Å resolution revealed a binding site that does not conserve the "hot spots" present in mVβ8.2-SEC2, mVβ8.2-SEC3, mVβ8.2-SEB, and mVβ8.2-SPEA complexes. Analysis of the mVβ8.2-SEG interface allowed us to explain the higher affinity of this complex compared with the others, which may account for the early activation of T-cells bearing mVβ8.2 by SEG. This mode of interaction between SEG and mVβ8.2 could be an adaptive advantage to bestow on the pathogen a faster rate of colonization of the host.


  • Organizational Affiliation
    • Cátedra de Inmunología and Instituto de Estudios de la Inmunidad Humoral Prof Ricardo A. Margni, Consejo Nacional de Investigaciones Científicas y Técnicas, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Junín 956 4to P, 1113 Buenos Aires, Argentina.

Macromolecule Content 

  • Total Structure Weight: 79.7 kDa 
  • Atom Count: 5,841 
  • Modeled Residue Count: 673 
  • Deposited Residue Count: 696 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
variable beta 8.2 mouse T cell receptor
A, C
109Mus musculusMutation(s): 8 
UniProt
Find proteins for A2NTY6 (Mus musculus)
Explore A2NTY6 
Go to UniProtKB:  A2NTY6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA2NTY6
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Enterotoxin SEG
B, D
239Staphylococcus aureusMutation(s): 0 
UniProt
Find proteins for D0EMB6 (Staphylococcus aureus)
Explore D0EMB6 
Go to UniProtKB:  D0EMB6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD0EMB6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.211 (Depositor), 0.206 (DCC) 
  • R-Value Work:  0.179 (Depositor), 0.176 (DCC) 
  • R-Value Observed: 0.180 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.185α = 90
b = 91.185β = 90
c = 233.401γ = 120
Software Package:
Software NamePurpose
ADSCdata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-10-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.3: 2024-10-16
    Changes: Structure summary