3LPX | pdb_00003lpx

Crystal structure of GyrA

PDB DOI: https://doi.org/10.2210/pdb3LPX/pdb

Classification: ISOMERASE
Organism(s): Colwellia psychrerythraea 34H
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-02-07 Released: 2011-02-16
Deposition Author(s): Jung, H.Y., Heo, Y.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.287 (Depositor), 0.287 (DCC)
R-Value Work:
0.262 (Depositor), 0.262 (DCC)
R-Value Observed:
0.262 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3LPX

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of GyrA

Heo, Y.S.

To be published.

Macromolecule Content

Total Structure Weight: 112.56 kDa
Atom Count: 7,331
Modeled Residue Count: 920
Deposited Residue Count: 1,000
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA gyrase, A subunit	A, B	500	Colwellia psychrerythraea 34H	Mutation(s): 0 Gene Names: gyrA, CPS_2331 EC: 5.99.1.3 (PDB Primary Data), 5.6.2.2 (UniProt)
UniProt
Find proteins for Q482G7 (Colwellia psychrerythraea (strain 34H / ATCC BAA-681)) Explore Q482G7 Go to UniProtKB: Q482G7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q482G7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.287 (Depositor), 0.287 (DCC)
R-Value Work: 0.262 (Depositor), 0.262 (DCC)
R-Value Observed: 0.262 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 98.979	α = 90
b = 101.555	β = 90
c = 141.827	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-02-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-02-16
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.