3LOD | pdb_00003lod

The crystal structure of the putative acyl-CoA N-acyltransferase from Klebsiella pneumoniae subsp.pneumoniae MGH 78578

PDB DOI: https://doi.org/10.2210/pdb3LOD/pdb

Classification: TRANSFERASE
Organism(s): Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2010-02-03 Released: 2010-03-16
Deposition Author(s): Zhang, R., Volkart, L., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.263 (Depositor), 0.267 (DCC)
R-Value Work:
0.226 (Depositor), 0.235 (DCC)
R-Value Observed:
0.227 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of the putative acyl-CoA N-acyltransferase from Klebsiella pneumoniae

Zhang, R., Volkart, L., Bearden, J., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 17.85 kDa
Atom Count: 1,148
Modeled Residue Count: 145
Deposited Residue Count: 162
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative acyl-CoA N-acyltransferase	A	162	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Mutation(s): 0 Gene Names: KPN78578_16030, KPN_01633
UniProt
Find proteins for A6T8Z3 (Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)) Explore A6T8Z3 Go to UniProtKB: A6T8Z3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A6T8Z3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.263 (Depositor), 0.267 (DCC)
R-Value Work: 0.226 (Depositor), 0.235 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.734	α = 90
b = 86.734	β = 90
c = 99.801	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-03-16

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2010-03-16
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.