3LNW | pdb_00003lnw

Close correlation of protein thermostability and self-buried area rate revealed by crystal structure of HPr from Thermoanaerobacter tengcongensis MB4

PDB DOI: https://doi.org/10.2210/pdb3LNW/pdb

Classification: TRANSFERASE
Organism(s): Caldanaerobacter subterraneus subsp. tengcongensis MB4
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-02-03 Released: 2011-02-16
Deposition Author(s): Gao, G.G., Feng, C., Gao, F., Liu, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.221 (Depositor), 0.230 (DCC)
R-Value Work:
0.190 (Depositor), 0.195 (DCC)
R-Value Observed:
0.192 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Close correlation of protein thermostability and self-buried area rate revealed by crystal structure of HPr from Thermoanaerobacter tengcongensis MB4

Gao, G.G., Feng, C., Gao, F., Liu, Y.

To be published.

Macromolecule Content

Total Structure Weight: 28.86 kDa
Atom Count: 2,097
Modeled Residue Count: 258
Deposited Residue Count: 264
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphotransferase system, HPr-related proteins	A, B, C	88	Caldanaerobacter subterraneus subsp. tengcongensis MB4	Mutation(s): 0 Gene Names: FruB, TTE1820
UniProt
Find proteins for Q8R910 (Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)) Explore Q8R910 Go to UniProtKB: Q8R910
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8R910
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.221 (Depositor), 0.230 (DCC)
R-Value Work: 0.190 (Depositor), 0.195 (DCC)
R-Value Observed: 0.192 (Depositor)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.972	α = 90
b = 67.972	β = 90
c = 50.444	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-02-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-02-16
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-20
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.