3KF2

The HCV NS3/NS4A protease apo structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.207 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Induced-Fit Binding of the Macrocyclic Noncovalent Inhibitor TMC435 to its HCV NS3/NS4A Protease Target

Cummings, M.D.Lindberg, J.D.Lin, T.-I.de Kock, H.Lenz, O.Lilja, E.Fellander, S.Baraznenok, V.Nystrom, S.Nilsson, M.Vrang, L.Edlund, M.Rosenquist, A.Samuelsson, B.Raboisson, P.Simmen, K.

(2010) Angew Chem Int Ed Engl 49: 1652-1655


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PolyproteinA,
C [auth B]
200Hepacivirus hominisMutation(s): 1 
EC: 3.4.21.98
UniProt
Find proteins for B2Y2M9 (Hepacivirus hominis)
Explore B2Y2M9 
Go to UniProtKB:  B2Y2M9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB2Y2M9
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
19-mer peptide from Genome polyproteinB [auth C],
D
23Hepacivirus hominisMutation(s): 0 
UniProt
Find proteins for Q6GYR8 (Hepacivirus hominis)
Explore Q6GYR8 
Go to UniProtKB:  Q6GYR8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6GYR8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.207 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 224.924α = 90
b = 224.924β = 90
c = 75.545γ = 120
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DNAdata collection

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-03-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2021-11-10
    Changes: Database references, Derived calculations
  • Version 1.3: 2023-11-01
    Changes: Data collection, Refinement description