3KB5

PRY-SPRY domain of human TRIM72

• PDB DOI: https://doi.org/10.2210/pdb3KB5/pdb

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-10-20 Released: 2009-12-22 
• Deposition Author(s): Park, E.Y., Kwon, O.-B., Jeong, B.-C., Song, H.K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.237 (Depositor) 
• R-Value Work: 
  0.219 (Depositor), 0.220 (DCC) 

Literature

Crystal structure of PRY-SPRY domain of human TRIM72

Park, E.Y., Kwon, O.-B., Jeong, B.-C., Yi, J.-S., Lee, C.S., Ko, Y.-G., Song, H.K.

(2009) Proteins 

• PubMed: 19967786 
• DOI: https://doi.org/10.1002/prot.22647
• Primary Citation of Related Structures:  
  3KB5

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Organizational Affiliation: 

School of Life Sciences and Biotechnology, Korea University, Seoul 136-701, Korea.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 21.6 kDa 
• Atom Count: 1,686 
• Modelled Residue Count: 193 
• Deposited Residue Count: 193 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tripartite motif-containing protein 72	A	193	Homo sapiens	Mutation(s): 0  Gene Names: PRY-SPRY EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q6ZMU5 (Homo sapiens) Explore Q6ZMU5  Go to UniProtKB:  Q6ZMU5
PHAROS:  Q6ZMU5 GTEx:  ENSG00000177238

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.237 (Depositor) 
• R-Value Work:  0.219 (Depositor), 0.220 (DCC) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 153.747	α = 90
b = 35.937	β = 99.87
c = 33.2	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-12-22 
Deposition Author(s): Park, E.Y., Kwon, O.-B., Jeong, B.-C., Song, H.K.

Revision History  

• Version 1.0: 2009-12-22
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-03-20
  Changes: Data collection, Database references