3JB5 | pdb_00003jb5

Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear

PDB DOI: https://doi.org/10.2210/pdb3JB5/pdb
EM Map EMD-6398: EMDB EMDataResource

Classification: VIRUS
Organism(s): Propionibacterium phage PA6
Mutation(s): No

Deposited: 2015-07-23 Released: 2016-07-27
Deposition Author(s): Chiou, J., Zhang, X., Marinelli, L.J., Modlin, R.L., Zhou, Z.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 3JB5

This is version 1.2 of the entry. See complete history.

Literature

Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear

Chiou, J., Zhang, X., Marinelli, L.J., Modlin, R.L., Zhou, Z.H.

To be published.

Macromolecule Content

Total Structure Weight: 229.36 kDa
Atom Count: 15,232
Modeled Residue Count: 2,076
Deposited Residue Count: 2,205
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
major capsid protein	A, B, C, D, E A, B, C, D, E, F, G	315	Propionibacterium phage PA6	Mutation(s): 0
UniProt
Find proteins for A4K473 (Propionibacterium phage PA6) Explore A4K473 Go to UniProtKB: A4K473
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A4K473
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	FREALIGN

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-07-27

Deposition Author(s):

Marinelli, L.J.

Revision History (Full details and data files)

Version 1.0: 2016-07-27
Type: Initial release
Version 1.1: 2018-07-18
Changes: Data collection
Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.