3J6C | pdb_00003j6c

Cryo-EM structure of MAVS CARD filament


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.60 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 3J6C

This is version 1.2 of the entry. See complete history

Literature

Structural basis for the prion-like MAVS filaments in antiviral innate immunity.

Xu, H.He, X.Zheng, H.Huang, L.J.Hou, F.Yu, Z.de la Cruz, M.J.Borkowski, B.Zhang, X.Chen, Z.J.Jiang, Q.X.

(2014) Elife 3: e01489-e01489

  • DOI: https://doi.org/10.7554/eLife.01489
  • Primary Citation Related Structures: 
    3J6C, 4O9F, 4O9L

  • PubMed Abstract: 

    Mitochondrial antiviral signaling (MAVS) protein is required for innate immune responses against RNA viruses. In virus-infected cells MAVS forms prion-like aggregates to activate antiviral signaling cascades, but the underlying structural mechanism is unknown. Here we report cryo-electron microscopic structures of the helical filaments formed by both the N-terminal caspase activation and recruitment domain (CARD) of MAVS and a truncated MAVS lacking part of the proline-rich region and the C-terminal transmembrane domain. Both structures are left-handed three-stranded helical filaments, revealing specific interfaces between individual CARD subunits that are dictated by electrostatic interactions between neighboring strands and hydrophobic interactions within each strand. Point mutations at multiple locations of these two interfaces impaired filament formation and antiviral signaling. Super-resolution imaging of virus-infected cells revealed rod-shaped MAVS clusters on mitochondria. These results elucidate the structural mechanism of MAVS polymerization, and explain how an α-helical domain uses distinct chemical interactions to form self-perpetuating filaments. DOI: http://dx.doi.org/10.7554/eLife.01489.001.


  • Organizational Affiliation
    • Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, United States.

Macromolecule Content 

  • Total Structure Weight: 10.83 kDa 
  • Atom Count: 779 
  • Modeled Residue Count: 93 
  • Deposited Residue Count: 93 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial antiviral-signaling protein93Homo sapiensMutation(s): 0 
Gene Names: MAVSIPS1KIAA1271VISA
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z434 (Homo sapiens)
Explore Q7Z434 
Go to UniProtKB:  Q7Z434
PHAROS:  Q7Z434
GTEx:  ENSG00000088888 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z434
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.60 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONEMAN
RECONSTRUCTIONIMAGIC4D
RECONSTRUCTIONMRC
RECONSTRUCTIONSPIDER

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-03-05
    Type: Initial release
  • Version 1.1: 2018-07-18
    Changes: Author supporting evidence, Data collection
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations, Refinement description