3IU0 | pdb_00003iu0

Structural basis for zymogen activation and substrate binding of transglutaminase from Streptomyces mobaraense

PDB DOI: https://doi.org/10.2210/pdb3IU0/pdb

Classification: TRANSFERASE
Organism(s): Streptomyces mobaraensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-08-28 Released: 2010-09-15
Deposition Author(s): Li, T.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.244 (Depositor), 0.245 (DCC)
R-Value Work:
0.210 (Depositor), 0.211 (DCC)
R-Value Observed:
0.213 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Structural basis for zymogen activation and substrate binding of transglutaminase from Streptomyces mobaraense

Yang, M., Wang, J.M., Wu, T.K., Li, T.T.

To be published.

Macromolecule Content

Total Structure Weight: 43.33 kDa
Atom Count: 2,927
Modeled Residue Count: 354
Deposited Residue Count: 382
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein-glutamine gamma-glutamyltransferase	A	382	Streptomyces mobaraensis	Mutation(s): 0 EC: 2.3.2.13
UniProt
Find proteins for P81453 (Streptomyces mobaraensis) Explore P81453 Go to UniProtKB: P81453
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P81453
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.244 (Depositor), 0.245 (DCC)
R-Value Work: 0.210 (Depositor), 0.211 (DCC)
R-Value Observed: 0.213 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.333	α = 90
b = 67.123	β = 90
c = 83.969	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
MOLREP	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-09-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-09-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.