3IHX

Methyltransferase domain of human PR domain-containing protein 10

• PDB DOI: https://doi.org/10.2210/pdb3IHX/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-07-31 Released: 2009-08-18 
• Deposition Author(s): Amaya, M.F., Dombrovski, L., Ni, S., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Botchkarev, A., Min, J., Plotnikov, A.N., Wu, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.298 
• R-Value Work: 0.242 
• R-Value Observed: 0.244 

Starting Models: experimental

Literature

Methyltransferase domain of human PR domain-containing protein 10

Amaya, M.F., Dombrovski, L., Ni, S., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Botchkarev, A., Min, J., Plotnikov, A.N., Wu, H., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 71.6 kDa 
• Atom Count: 3,834 
• Modelled Residue Count: 495 
• Deposited Residue Count: 608 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PR domain zinc finger protein 10	A, B, C, D	152	Homo sapiens	Mutation(s): 0  Gene Names: PRDM10, KIAA1231, PFM7, TRIS EC: 2.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NQV6 (Homo sapiens) Explore Q9NQV6  Go to UniProtKB:  Q9NQV6
PHAROS:  Q9NQV6 GTEx:  ENSG00000170325

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.298 
• R-Value Work: 0.242 
• R-Value Observed: 0.244 
• Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.864	α = 90
b = 94.864	β = 90
c = 76.769	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-08-18 
Deposition Author(s): Amaya, M.F., Dombrovski, L., Ni, S., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Botchkarev, A., Min, J., Plotnikov, A.N., Wu, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2009-08-18
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2017-11-01
  Changes: Refinement description
• Version 1.3: 2023-09-06
  Changes: Data collection, Database references, Refinement description