3IC8 | pdb_00003ic8

The Crystal Structure of a GST-like protein from Pseudomonas syringae to 2.4A

PDB DOI: https://doi.org/10.2210/pdb3IC8/pdb

Classification: structural genomics, unknown function
Organism(s): Pseudomonas syringae pv. tomato
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2009-07-17 Released: 2009-09-01
Deposition Author(s): Stein, A.J., Chhor, G., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.246 (Depositor), 0.269 (DCC)
R-Value Work:
0.192 (Depositor), 0.226 (DCC)
R-Value Observed:
0.195 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3IC8

This is version 1.3 of the entry. See complete history.

Literature

The Crystal Structure of a GST-like protein from Pseudomonas syringae to 2.4A

Stein, A.J., Chhor, G., Freeman, L., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 137.43 kDa
Atom Count: 8,579
Modeled Residue Count: 1,098
Deposited Residue Count: 1,240
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized GST-like proteinprotein	A, B, C, D	310	Pseudomonas syringae pv. tomato	Mutation(s): 0 Gene Names: PSPTO1263
UniProt
Find proteins for Q887M8 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q887M8 Go to UniProtKB: Q887M8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q887M8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.246 (Depositor), 0.269 (DCC)
R-Value Work: 0.192 (Depositor), 0.226 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.671	α = 90
b = 102.266	β = 90
c = 148.336	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	phasing
SHELX	phasing
MLPHARE	phasing
DM	phasing
ARP/wARP	model building
Coot	model building

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-09-01

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2009-09-01
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2024-11-27
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.