Crystal structure of human PDE4a with 4-(3-butoxy-4-methoxyphenyl)methyl-2-imidazolidone
Cheng, R.K.Y., Crawley, L., Barker, J., Wood, M., Felicetti, B., Whittaker, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
cAMP-specific 3',5'-cyclic phosphodiesterase 4A | 354 | Homo sapiens | Mutation(s): 0  Gene Names: PDE4A, DPDE2 EC: 3.1.4.17 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P27815 (Homo sapiens) Explore P27815  Go to UniProtKB:  P27815 | |||||
PHAROS:  P27815 GTEx:  ENSG00000065989  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P27815 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
0MO Query on 0MO | E [auth A], J [auth B] | (4R)-4-(3-butoxy-4-methoxybenzyl)imidazolidin-2-one C15 H22 N2 O3 PDMUULPVBYQBBK-GFCCVEGCSA-N | |||
GOL Query on GOL | F [auth A], K [auth B], L [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | C [auth A], H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CO Query on CO | G [auth A] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N | |||
MG Query on MG | D [auth A], I [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CSS Query on CSS | A, B | L-PEPTIDE LINKING | C3 H7 N O2 S2 | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 105.406 | α = 90 |
b = 105.406 | β = 90 |
c = 165.252 | γ = 90 |
Software Name | Purpose |
---|---|
DNA | data collection |
PHASER | phasing |
REFMAC | refinement |
CrystalClear | data reduction |
CrystalClear | data scaling |