3HUH | pdb_00003huh

The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium

PDB DOI: https://doi.org/10.2210/pdb3HUH/pdb

Classification: VIRAL PROTEIN
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-06-14 Released: 2009-06-23
Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.256 (Depositor), 0.255 (DCC)
R-Value Work:
0.236 (Depositor), 0.234 (DCC)
R-Value Observed:
0.236 (Depositor)

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This is version 1.5 of the entry. See complete history.

Literature

The structure of biphenyl-2,3-diol 1,2-dioxygenase iii-related protein from salmonella typhimurium

Fedorov, A.A., Fedorov, E.V., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 68.47 kDa
Atom Count: 4,083
Modeled Residue Count: 486
Deposited Residue Count: 608
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Virulence protein STM3117	A, B, C, D	152	Salmonella enterica subsp. enterica serovar Typhimurium	Mutation(s): 0 Gene Names: STM3117
UniProt
Find proteins for Q8ZM36 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZM36 Go to UniProtKB: Q8ZM36
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8ZM36
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.256 (Depositor), 0.255 (DCC)
R-Value Work: 0.236 (Depositor), 0.234 (DCC)
R-Value Observed: 0.236 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.898	α = 90
b = 138.255	β = 112.91
c = 51.412	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SHELX	model building
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
SHELX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-06-23

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2009-06-23
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2012-10-24
Changes: Structure summary
Version 1.3: 2018-11-21
Changes: Data collection, Structure summary
Version 1.4: 2021-02-10
Changes: Database references, Structure summary
Version 1.5: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.