3HL6 | pdb_00003hl6

Staphylococcus aureus pathogenicity island 3 ORF9 protein

• PDB DOI: https://doi.org/10.2210/pdb3HL6/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Staphylococcus aureus subsp. aureus COL
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-05-26 Released: 2010-06-09 
• Deposition Author(s): Kruse, A.C., Huseby, M., Shi, K., Digre, J., Schlievert, P.M., Ohlendorf, D.H., Earhart, C.A.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.276 (Depositor), 0.276 (DCC) 
• R-Value Work: 
  0.228 (Depositor), 0.226 (DCC) 
• R-Value Observed: 
  0.230 (Depositor) 

Literature

Structural and functional studies of a pathogenicity island protein from Staphylococcus aureus

Kruse, A.C., Huseby, M., Shi, K., Digre, J., Schlievert, P.M., Ohlendorf, D.H., Earhart, C.A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 51.92 kDa 
• Atom Count: 3,143 
• Modeled Residue Count: 381 
• Deposited Residue Count: 450 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pathogenicity island protein	A, B	225	Staphylococcus aureus subsp. aureus COL	Mutation(s): 0  Gene Names: SACOL0900
UniProt
Find proteins for A0A0H2WYW3 (Staphylococcus aureus (strain COL)) Explore A0A0H2WYW3  Go to UniProtKB:  A0A0H2WYW3

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	C [auth A], D [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.276 (Depositor), 0.276 (DCC) 
• R-Value Work:  0.228 (Depositor), 0.226 (DCC) 
• R-Value Observed: 0.230 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.739	α = 90
b = 78.578	β = 107.41
c = 83.541	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
SHARP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-06-09 
Deposition Author(s): Kruse, A.C., Huseby, M., Shi, K., Digre, J., Schlievert, P.M., Ohlendorf, D.H., Earhart, C.A.

Revision History  

• Version 1.0: 2010-06-09
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2024-02-21
  Changes: Data collection, Database references, Derived calculations