3HFW | pdb_00003hfw

Crystal Structure of human ADP-ribosylhydrolase 1 (hARH1)

• PDB DOI: https://doi.org/10.2210/pdb3HFW/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2009-05-13 Released: 2010-05-26 
• Deposition Author(s): Mueller-Dieckmann, C., Weiss, M.S., Mueller-Dieckmann, J., Koch-Nolte, F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free: 
  0.185 (Depositor), 0.194 (DCC) 
• R-Value Work: 
  0.155 (Depositor), 0.169 (DCC) 
• R-Value Observed: 
  0.156 (Depositor) 

Literature

Crystal Structure of human ADP-ribosylhydrolase 1

Koch-Nolte, F., Mueller-Dieckmann, J., Weiss, M.S., Mueller-Dieckmann, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 40.08 kDa 
• Atom Count: 2,947 
• Modeled Residue Count: 357 
• Deposited Residue Count: 357 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein ADP-ribosylarginine hydrolase	A	357	Homo sapiens	Mutation(s): 0  EC: 3.2.2.19
UniProt & NIH Common Fund Data Resources
Find proteins for P54922 (Homo sapiens) Explore P54922  Go to UniProtKB:  P54922
PHAROS:  P54922 GTEx:  ENSG00000144843

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ADP	B [auth A]	ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N
K	C [auth A]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N
CL	D [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
MG	E [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free:  0.185 (Depositor), 0.194 (DCC) 
• R-Value Work:  0.155 (Depositor), 0.169 (DCC) 
• R-Value Observed: 0.156 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.28	α = 90
b = 52.79	β = 90
c = 140.34	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-05-26 
Deposition Author(s): Mueller-Dieckmann, C., Weiss, M.S., Mueller-Dieckmann, J., Koch-Nolte, F.

Revision History  

• Version 1.0: 2010-05-26
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2019-09-04
  Changes: Data collection
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations