Crystal structure of SusD superfamily protein (YP_213019.1) from Bacteroides fragilis NCTC 9343 at 2.10 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
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Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Uncharacterized SusD superfamily protein | 515 | Bacteroides fragilis NCTC 9343 | Mutation(s): 0  Gene Names: BF3413, YP_213019.1 | ||
UniProt | |||||
Find proteins for Q5L9X2 (Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2)) Explore Q5L9X2  Go to UniProtKB:  Q5L9X2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5L9X2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | C [auth A] D [auth A] E [auth A] F [auth A] J [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | G [auth A] H [auth A] I [auth A] L [auth B] M [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Modified Residues 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET | |
OCS Query on OCS | A, B | L-PEPTIDE LINKING | C3 H7 N O5 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 88.921 | α = 90 |
b = 50.377 | β = 108.05 |
c = 117.95 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PHENIX | refinement |
SHELX | phasing |
MolProbity | model building |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
MAR345 | data collection |
XDS | data reduction |
autoSHARP | phasing |
SHELXD | phasing |