Correlations of protein dynamics with function in HIV-1 protease catalysis
Torbeev, V.Y., Kent, S.B.H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
COVALENT DIMER [L-ALA51,D-ALA51'] HIV-1 PROTEASE | 203 | Homo sapiens | Mutation(s): 0  EC: 3.4.23.16 | ||
UniProt | |||||
Find proteins for P03369 (Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2)) Explore P03369  Go to UniProtKB:  P03369 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P03369 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
JG-365 inhibitor | 7 | synthetic construct | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
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Modified Residues 3 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
ABA Query on ABA | A, B | L-PEPTIDE LINKING | C4 H9 N O2 | ALA | |
NLE Query on NLE | A, B | L-PEPTIDE LINKING | C6 H13 N O2 | LEU | |
YCM Query on YCM | A, B | L-PEPTIDE LINKING | C5 H10 N2 O3 S | CYS |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000228 Query on PRD_000228 | C, D | JG-365 | Peptide-like / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
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a = 51.172 | α = 90 |
b = 58.456 | β = 90 |
c = 60.95 | γ = 90 |
Software Name | Purpose |
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HKL-2000 | data collection |
MOLREP | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |