3GHY | pdb_00003ghy

Crystal structure of a putative ketopantoate reductase from Ralstonia solanacearum MolK2

PDB DOI: https://doi.org/10.2210/pdb3GHY/pdb

Classification: OXIDOREDUCTASE
Organism(s): Ralstonia solanacearum MolK2
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-03-04 Released: 2009-03-17
Deposition Author(s): Patskovsky, Y., Ramagopal, U.A., Toro, R., Morano, C., Freeman, J., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.278 (Depositor), 0.276 (DCC)
R-Value Work:
0.231 (Depositor), 0.231 (DCC)
R-Value Observed:
0.233 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of a putative ketopantoate reductase from Ralstonia solanacearum MolK2

Patskovsky, Y., Ramagopal, U.A., Toro, R., Morano, C., Freeman, J., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 69.98 kDa
Atom Count: 4,929
Modeled Residue Count: 642
Deposited Residue Count: 670
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ketopantoate reductase protein	A, B	335	Ralstonia solanacearum MolK2	Mutation(s): 0 Gene Names: PRK06522, RSMK02416 EC: 1.1.1.169
UniProt
Find proteins for F6G5W7 (Ralstonia solanacearum (strain Po82)) Explore F6G5W7 Go to UniProtKB: F6G5W7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	F6G5W7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.278 (Depositor), 0.276 (DCC)
R-Value Work: 0.231 (Depositor), 0.231 (DCC)
R-Value Observed: 0.233 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.648	α = 90
b = 70.648	β = 90
c = 145.409	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SHELXD	phasing
REFMAC	refinement
DENZO	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-03-17

Deposition Author(s):

Ramagopal, U.A.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2009-03-17
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2018-11-21
Changes: Data collection, Structure summary
Version 1.3: 2021-02-10
Changes: Database references, Structure summary
Version 1.4: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.