Design and syntheses of novel C7-derived-aminobenzimidazole ureas: bacterial gyrase/topoisomerase IV inhibitors with potent Gram-positve antibacterial activity
Wei, Y., Letiran, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA topoisomerase 4 subunit B | 201 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: parE, nfxD, b3030, JW2998 EC: 5.99.1 (PDB Primary Data), 5.6.2.2 (UniProt) | ||
UniProt | |||||
Find proteins for P20083 (Escherichia coli (strain K12)) Explore P20083  Go to UniProtKB:  P20083 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20083 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
1EU Query on 1EU | C [auth A], D [auth B] | 1-(4-acetyl-6-pyridin-3-yl-1H-benzimidazol-2-yl)-3-ethylurea C17 H17 N5 O2 KDHATIBQZJAMKQ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 85.42 | α = 90 |
b = 72.84 | β = 96.41 |
c = 70.97 | γ = 90 |
Software Name | Purpose |
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ADSC | data collection |
AMoRE | phasing |
CNX | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |