3FLE | pdb_00003fle

SE_1780 protein of unknown function from Staphylococcus epidermidis.

PDB DOI: https://doi.org/10.2210/pdb3FLE/pdb

Classification: structural genomics, unknown function
Organism(s): Staphylococcus epidermidis ATCC 12228
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-12-18 Released: 2009-01-13
Deposition Author(s): Osipiuk, J., Hatzos, C., Clancy, S., Kim, Y., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free:
0.223 (Depositor), 0.204 (DCC)
R-Value Work:
0.181 (Depositor), 0.177 (DCC)
R-Value Observed:
0.183 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3FLE

This is version 1.3 of the entry. See complete history.

Literature

X-ray crystal structure of SE_1780 protein of unknown function from Staphylococcus epidermidis.

Osipiuk, J., Hatzos, C., Clancy, S., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 57.29 kDa
Atom Count: 4,344
Modeled Residue Count: 486
Deposited Residue Count: 498
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SE_1780 protein	A, B	249	Staphylococcus epidermidis ATCC 12228	Mutation(s): 0 Gene Names: SE_1780
UniProt
Find proteins for A0A0H2VHE3 (Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)) Explore A0A0H2VHE3 Go to UniProtKB: A0A0H2VHE3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H2VHE3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free: 0.223 (Depositor), 0.204 (DCC)
R-Value Work: 0.181 (Depositor), 0.177 (DCC)
R-Value Observed: 0.183 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.722	α = 90
b = 41.458	β = 90.06
c = 153.996	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	data reduction
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-01-13

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2009-01-13
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2017-11-01
Changes: Advisory, Refinement description
Version 1.3: 2024-11-27
Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.