3FK4 | pdb_00003fk4

Crystal structure of RuBisCO-like protein from Bacillus Cereus ATCC 14579

PDB DOI: https://doi.org/10.2210/pdb3FK4/pdb

Classification: ISOMERASE
Organism(s): Bacillus cereus ATCC 14579
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-12-15 Released: 2009-01-13
Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Imker, H.J., Burley, S.K., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.257 (Depositor), 0.256 (DCC)
R-Value Work:
0.235 (Depositor), 0.235 (DCC)
R-Value Observed:
0.235 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 3FK4

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of RuBisCO-like protein from Bacillus Cereus ATCC 14579

Fedorov, A.A., V Fedorov, E., Imker, H., Burley, S.K., Gerlt, J.A., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 91.05 kDa
Atom Count: 6,206
Modeled Residue Count: 779
Deposited Residue Count: 828
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RuBisCO-like protein	A, B	414	Bacillus cereus ATCC 14579	Mutation(s): 0 Gene Names: mtnW, BC_4036 EC: 5.3.2 (PDB Primary Data), 5.3.2.5 (UniProt)
UniProt
Find proteins for Q819E8 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)) Explore Q819E8 Go to UniProtKB: Q819E8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q819E8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.257 (Depositor), 0.256 (DCC)
R-Value Work: 0.235 (Depositor), 0.235 (DCC)
R-Value Observed: 0.235 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.922	α = 90
b = 115.669	β = 90
c = 116.436	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
BALBES	phasing
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-01-13

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2009-01-13
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2021-02-10
Changes: Database references, Structure summary
Version 1.3: 2023-09-06
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.