3EGO

Crystal structure of Probable 2-dehydropantoate 2-reductase panE from Bacillus Subtilis

• PDB DOI: https://doi.org/10.2210/pdb3EGO/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-09-11 Released: 2008-09-30 
• Deposition Author(s): Ramagopal, U.A., Toro, R., Gilmore, M., Hu, S., Maletic, M., Gheyi, T., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.260 
• R-Value Work: 0.204 
• R-Value Observed: 0.207 

Literature

Crystal structure of Probable 2-dehydropantoate 2-reductase panE from Bacillus Subtilis

Ramagopal, U.A., Toro, R., Gilmore, M., Hu, S., Maletic, M., Gheyi, T., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 68.79 kDa 
• Atom Count: 4,798 
• Modelled Residue Count: 583 
• Deposited Residue Count: 614 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable 2-dehydropantoate 2-reductase	A, B	307	Bacillus subtilis	Mutation(s): 0  Gene Names: panE, apbA, ylbQ, BSU15110 EC: 1.1.1.169
UniProt
Find proteins for O34661 (Bacillus subtilis (strain 168)) Explore O34661  Go to UniProtKB:  O34661

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.260 
• R-Value Work: 0.204 
• R-Value Observed: 0.207 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 160.86	α = 90
b = 43.658	β = 98.26
c = 83.757	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
CBASS	data collection
HKL-2000	data reduction
SHELXCD	phasing
SHELXE	model building
CCP4	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-09-30 
Deposition Author(s): Ramagopal, U.A., Toro, R., Gilmore, M., Hu, S., Maletic, M., Gheyi, T., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2008-09-30
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2021-02-10
  Changes: Database references, Structure summary
• Version 1.4: 2024-02-21
  Changes: Data collection, Database references