3E4B | pdb_00003e4b

Crystal structure of AlgK from Pseudomonas fluorescens WCS374r


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.280 (Depositor), 0.279 (DCC) 
  • R-Value Work: 
    0.220 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 
    0.220 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

AlgK is a TPR-containing protein and the periplasmic component of a novel exopolysaccharide secretin.

Keiski, C.L.Harwich, M.Jain, S.Neculai, A.M.Yip, P.Robinson, H.Whitney, J.C.Riley, L.Burrows, L.L.Ohman, D.E.Howell, P.L.

(2010) Structure 18: 265-273

  • DOI: https://doi.org/10.1016/j.str.2009.11.015
  • Primary Citation Related Structures: 
    3E4B

  • PubMed Abstract: 

    The opportunistic pathogen Pseudomonas aeruginosa causes chronic biofilm infections in cystic fibrosis patients. During colonization of the lung, P. aeruginosa converts to a mucoid phenotype characterized by overproduction of the exopolysaccharide alginate. Here we show that AlgK, a protein essential for production of high molecular weight alginate, is an outer membrane lipoprotein that contributes to the correct localization of the porin AlgE. Our 2.5 A structure shows AlgK is composed of 9.5 tetratricopeptide-like repeats, and three putative sites of protein-protein interaction have been identified. Bioinformatics analysis suggests that BcsA, PgaA, and PelB, involved in the production and export of cellulose, poly-beta-1,6-N-Acetyl-D-glucosamine, and Pel exopolysaccharide, respectively, share the same topology as AlgK/E. Together, our data suggest that AlgK plays a role in the assembly of the alginate biosynthetic complex and represents the periplasmic component of a new type of outer membrane secretin that differs from canonical bacterial capsular polysaccharide secretion systems.


  • Organizational Affiliation
    • Molecular Structure and Function, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada.

Macromolecule Content 

  • Total Structure Weight: 198.94 kDa 
  • Atom Count: 12,341 
  • Modeled Residue Count: 1,521 
  • Deposited Residue Count: 1,808 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
AlgK
A, B, C, D
452Pseudomonas fluorescensMutation(s): 0 
Gene Names: algK

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.280 (Depositor), 0.279 (DCC) 
  • R-Value Work:  0.220 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 0.220 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.09α = 90
b = 107.82β = 96.97
c = 119.03γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
SOLVEphasing
RESOLVEphasing
CNSrefinement
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-08-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 1.2: 2024-10-09
    Changes: Data collection, Database references, Derived calculations, Structure summary