3DQG | pdb_00003dqg

Peptide-binding domain of heat shock 70 kDa protein F, mitochondrial precursor, from Caenorhabditis elegans.

PDB DOI: https://doi.org/10.2210/pdb3DQG/pdb

Classification: CHAPERONE
Organism(s): Caenorhabditis elegans
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-07-09 Released: 2008-07-22
Deposition Author(s): Osipiuk, J., Mulligan, R., Gu, M., Voisine, C., Morimoto, R.I., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.72 Å
R-Value Free:
0.216 (Depositor), 0.215 (DCC)
R-Value Work:
0.183 (Depositor), 0.181 (DCC)
R-Value Observed:
0.184 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

X-ray crystal structure of peptide-binding domain of heat shock 70 kDa protein F, mitochondrial precursor, from Caenorhabditis elegans.

OSIPIUK, J., MULLIGAN, R., GU, M., VOISINE, C., MORIMOTO, R.I., JOACHIMIAK, A.

To be published.

Macromolecule Content

Total Structure Weight: 64.84 kDa
Atom Count: 5,278
Modeled Residue Count: 581
Deposited Residue Count: 604
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heat shock 70 kDa protein F	A, B, C, D	151	Caenorhabditis elegans	Mutation(s): 0 Gene Names: hsp-6, hsp70f, C37H5.8
UniProt
Find proteins for P11141 (Caenorhabditis elegans) Explore P11141 Go to UniProtKB: P11141
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P11141
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.72 Å
R-Value Free: 0.216 (Depositor), 0.215 (DCC)
R-Value Work: 0.183 (Depositor), 0.181 (DCC)
R-Value Observed: 0.184 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.418	α = 90
b = 120.159	β = 90
c = 56.77	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-07-22

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2008-07-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description