Download MendeleyCrystal structure of ammodytin L
Turk, D., Guncar, G., Krizaj, I.To be published.
3DIH
Crystal structure of ammodytin L
- PDB DOI: https://doi.org/10.2210/pdb3DIH/pdb
- Classification: TOXIN
- Organism(s): Vipera ammodytes ammodytes
- Mutation(s): No
- Membrane Protein: Yes OPM
- Deposited: 2008-06-20 Released: 2008-08-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.226
- R-Value Work: 0.156
- R-Value Observed: 0.159
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phospholipase A2 homolog, ammodytin L | 122 | Vipera ammodytes ammodytes | Mutation(s): 0 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P17935 (Vipera ammodytes ammodytes) Explore P17935 Go to UniProtKB: P17935 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P17935 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.226
- R-Value Work: 0.156
- R-Value Observed: 0.159
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 120.5 | α = 90 |
| b = 120.5 | β = 90 |
| c = 63.15 | γ = 120 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| MAIN | refinement |
| MOSFLM | data reduction |
| rotavata/agrovata | data scaling |
Entry History
Deposition Data
- Released Date: 2008-08-05 Deposition Author(s): Turk, D., Guncar, G., Krizaj, I.
Revision History (Full details and data files)
- Version 1.0: 2008-08-05
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-10-16
Changes: Data collection, Database references, Structure summary
