3DFA | pdb_00003dfa

Crystal structure of kinase domain of calcium-dependent protein kinase cgd3_920 from Cryptosporidium parvum

PDB DOI: https://doi.org/10.2210/pdb3DFA/pdb

Classification: TRANSFERASE
Organism(s): Cryptosporidium parvum Iowa II
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-06-11 Released: 2008-07-29
Deposition Author(s): Wernimont, A.K., Lew, J., Lin, Y.H., Hassanali, A., Khuu, C., Alam, Z., Kozieradzki, I., Cossar, D., Bochkarev, A., Arrowsmith, C.H., Bountra, C., Wilkstrom, M., Edwards, A.M., Hui, R., Artz, J.D., Xiao, T., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.263 (Depositor), 0.252 (DCC)
R-Value Work:
0.233 (Depositor), 0.226 (DCC)
R-Value Observed:
0.234 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of kinase domain of calcium-dependent protein kinase cgd3_920 from Cryptosporidium parvum.

Wernimont, A.K., Lew, J., Lin, Y.H., Hassanali, A., Khuu, C., Alam, Z., Kozieradzki, I., Cossar, D., Bochkarev, A., Arrowsmith, C.H., Bountra, C., Wilkstrom, M., Edwards, A.M., Hui, R., Artz, J.D., Xiao, T.

To be published.

Macromolecule Content

Total Structure Weight: 33.32 kDa
Atom Count: 2,183
Modeled Residue Count: 265
Deposited Residue Count: 286
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Calcium-dependent protein kinase cgd3_920	A	286	Cryptosporidium parvum Iowa II	Mutation(s): 0 Gene Names: CGD3_920 EC: 2.7.11.1
UniProt
Find proteins for A3FQ16 (Cryptosporidium parvum (strain Iowa II)) Explore A3FQ16 Go to UniProtKB: A3FQ16
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A3FQ16
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.263 (Depositor), 0.252 (DCC)
R-Value Work: 0.233 (Depositor), 0.226 (DCC)
R-Value Observed: 0.234 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.447	α = 90
b = 69.447	β = 90
c = 137.414	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-07-29

Deposition Author(s):

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2008-07-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description