3D5N | pdb_00003d5n

Crystal structure of the Q97W15_SULSO protein from Sulfolobus solfataricus. NESG target SsR125.

PDB DOI: https://doi.org/10.2210/pdb3D5N/pdb

Classification: structural genomics, unknown function
Organism(s): Saccharolobus solfataricus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-05-16 Released: 2008-07-15
Deposition Author(s): Vorobiev, S.M., Chen, Y., Seetharaman, J., Lee, D., Foote, R.E., Maglaqui, M., Janjua, H., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.266 (Depositor), 0.277 (DCC)
R-Value Work:
0.231 (Depositor), 0.244 (DCC)
R-Value Observed:
0.231 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the Q97W15_SULSO protein from Sulfolobus solfataricus. NESG target SsR125.

Vorobiev, S.M., Chen, Y., Seetharaman, J., Lee, D., Foote, R.E., Maglaqui, M., Janjua, H., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 182.06 kDa
Atom Count: 10,496
Modeled Residue Count: 1,377
Deposited Residue Count: 1,576
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Q97W15_SULSO	A B C [auth D] D [auth E] E [auth F] A, B, C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I]	197	Saccharolobus solfataricus	Mutation(s): 0 Gene Names: SSO2432
UniProt
Find proteins for Q97W15 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)) Explore Q97W15 Go to UniProtKB: Q97W15
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q97W15
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A B C [auth D] D [auth E] E [auth F] A, B, C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I]	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.266 (Depositor), 0.277 (DCC)
R-Value Work: 0.231 (Depositor), 0.244 (DCC)
R-Value Observed: 0.231 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.957	α = 90
b = 169.234	β = 90
c = 173.39	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
DENZO	data reduction
SCALEPACK	data scaling
SHELXDE	phasing
RESOLVE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-07-15

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2008-07-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-25
Changes: Author supporting evidence
Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary