3C72

Engineered RabGGTase in complex with a peptidomimetic inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.192 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Development of selective RabGGTase inhibitors and crystal structure of a RabGGTase-inhibitor complex.

Guo, Z.Wu, Y.W.Tan, K.T.Bon, R.S.Guiu-Rozas, E.Delon, C.Nguyen, T.U.Wetzel, S.Arndt, S.Goody, R.S.Blankenfeldt, W.Alexandrov, K.Waldmann, H.

(2008) Angew Chem Int Ed Engl 47: 3747-3750


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Geranylgeranyl transferase type-2 subunit alpha334Rattus norvegicusMutation(s): 0 
Gene Names: RabggtaGgta
EC: 2.5.1.60
UniProt
Find proteins for Q08602 (Rattus norvegicus)
Explore Q08602 
Go to UniProtKB:  Q08602
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08602
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Geranylgeranyl transferase type-2 subunit beta331Rattus norvegicusMutation(s): 0 
Gene Names: RabggtbGgtb
EC: 2.5.1.60
UniProt
Find proteins for Q08603 (Rattus norvegicus)
Explore Q08603 
Go to UniProtKB:  Q08603
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08603
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Binding Affinity Annotations 
IDSourceBinding Affinity
CX1 PDBBind:  3C72 IC50: 2.27e+4 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.192 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.192α = 90
b = 91.671β = 90
c = 115.439γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2008-07-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2017-08-02
    Changes: Refinement description, Source and taxonomy
  • Version 1.3: 2023-08-30
    Changes: Data collection, Database references, Derived calculations, Refinement description