3BZB | pdb_00003bzb

Crystal structure of uncharacterized protein CMQ451C from the primitive red alga Cyanidioschyzon merolae

PDB DOI: https://doi.org/10.2210/pdb3BZB/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Cyanidioschyzon merolae strain 10D
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-01-17 Released: 2008-01-29
Deposition Author(s): McCoy, J.G., Bitto, E., Bingman, C.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.79 Å
R-Value Free:
0.261 (Depositor), 0.301 (DCC)
R-Value Work:
0.209 (Depositor)
R-Value Observed:
0.212 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of uncharacterized protein CMQ451C from the primitive red alga Cyanidioschyzon merolae.

McCoy, J.G., Bitto, E., Bingman, C.A., Wesenberg, G.E., Phillips Jr., G.N.

To be published.

Macromolecule Content

Total Structure Weight: 62.25 kDa
Atom Count: 3,027
Modeled Residue Count: 389
Deposited Residue Count: 562
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	281	Cyanidioschyzon merolae strain 10D	Mutation(s): 0 Gene Names: CMQ451C
UniProt
Find proteins for D0VWS8 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore D0VWS8 Go to UniProtKB: D0VWS8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D0VWS8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.79 Å
R-Value Free: 0.261 (Depositor), 0.301 (DCC)
R-Value Work: 0.209 (Depositor)
R-Value Observed: 0.212 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.783	α = 90
b = 103.783	β = 90
c = 105.385	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SHARP	phasing
DM	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
HKL-2000	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-01-29

Deposition Author(s):

Wesenberg, G.E.

Phillips Jr., G.N.

Center for Eukaryotic Structural Genomics (CESG)

Revision History (Full details and data files)

Version 1.0: 2008-01-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.