3BIJ | pdb_00003bij

Crystal structure of protein GSU0716 from Geobacter sulfurreducens. Northeast Structural Genomics target GsR13

PDB DOI: https://doi.org/10.2210/pdb3BIJ/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Geobacter sulfurreducens PCA
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-11-30 Released: 2007-12-11
Deposition Author(s): Forouhar, F., Neely, H., Su, M., Seetharaman, J., Benach, J., Conover, K., Fang, Y., Xiao, R., Owen, L.A., Maglaqui, M., Cunningham, K., Baran, M.C., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.267 (Depositor), 0.283 (DCC)
R-Value Work:
0.207 (Depositor), 0.225 (DCC)
R-Value Observed:
0.207 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of protein GSU0716 from Geobacter sulfurreducens.

Forouhar, F., Neely, H., Su, M., Seetharaman, J., Benach, J., Conover, K., Fang, Y., Xiao, R., Owen, L.A., Maglaqui, M., Cunningham, K., Baran, M.C., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 94.34 kDa
Atom Count: 6,200
Modeled Residue Count: 791
Deposited Residue Count: 855
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein GSU0716	A, B, C	285	Geobacter sulfurreducens PCA	Mutation(s): 0 Gene Names: GSU0716, 2687216
UniProt
Find proteins for Q74F93 (Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)) Explore Q74F93 Go to UniProtKB: Q74F93
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q74F93
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.267 (Depositor), 0.283 (DCC)
R-Value Work: 0.207 (Depositor), 0.225 (DCC)
R-Value Observed: 0.207 (Depositor)

Space Group: I 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 121.718	α = 90
b = 121.718	β = 90
c = 219.038	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
MAR345	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
SnB	phasing
RESOLVE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-12-11

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-12-11
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary