3BF2 | pdb_00003bf2

Crystal structure of the A1KSW9_NEIMF protein from Neisseria meningitidis. Northeast Structural Genomics Consortium target MR36a

PDB DOI: https://doi.org/10.2210/pdb3BF2/pdb

Classification: LIPOPROTEIN
Organism(s): Neisseria meningitidis FAM18
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-11-20 Released: 2007-12-04
Deposition Author(s): Vorobiev, S.M., Abashidze, M., Seetharaman, J., Cunningham, K., Maglaqui, M., Owens, L., Fang, Y., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.258 (Depositor), 0.285 (DCC)
R-Value Work:
0.226 (Depositor), 0.245 (DCC)
R-Value Observed:
0.226 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3BF2

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the A1KSW9_NEIMF protein from Neisseria meningitidis.

Vorobiev, S.M., Abashidze, M., Seetharaman, J., Cunningham, K., Maglaqui, M., Owens, L., Fang, Y., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 17.33 kDa
Atom Count: 982
Modeled Residue Count: 125
Deposited Residue Count: 152
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative lipoprotein	A	152	Neisseria meningitidis FAM18	Mutation(s): 1 Gene Names: NMC0657
UniProt
Find proteins for A1KSW9 (Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18)) Explore A1KSW9 Go to UniProtKB: A1KSW9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A1KSW9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.258 (Depositor), 0.285 (DCC)
R-Value Work: 0.226 (Depositor), 0.245 (DCC)
R-Value Observed: 0.226 (Depositor)

Space Group: P 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.296	α = 90
b = 65.296	β = 90
c = 92.49	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
DENZO	data reduction
SCALEPACK	data scaling
SHELXDE	phasing
RESOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-12-04

Deposition Author(s):

Seetharaman, J.

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-12-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-25
Changes: Author supporting evidence
Version 1.3: 2021-10-20
Changes: Database references, Derived calculations
Version 1.4: 2024-10-30
Changes: Data collection, Structure summary