3BAN | pdb_00003ban

The crystal structure of mannonate dehydratase from Streptococcus suis serotype2

PDB DOI: https://doi.org/10.2210/pdb3BAN/pdb

Classification: LYASE
Organism(s): Streptococcus suis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-11-08 Released: 2008-11-11
Deposition Author(s): Peng, H., Zhang, Q.M., Gao, F., Liu, Y.W., Qi, J.X., Gao, G.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.286 (Depositor), 0.275 (DCC)
R-Value Work:
0.234 (Depositor), 0.229 (DCC)
R-Value Observed:
0.237 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of mannonate dehydratase from Streptococcus suis serotype2

Peng, H., Zhang, Q.M., Gao, F., Liu, Y.W., Qi, J.X., Gao, G.F.

To be published.

Macromolecule Content

Total Structure Weight: 86.05 kDa
Atom Count: 5,471
Modeled Residue Count: 698
Deposited Residue Count: 772
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
D-mannonate dehydratase	A, B	386	Streptococcus suis	Mutation(s): 0 Gene Names: UxuA EC: 4.2.1.8
UniProt
Find proteins for A4VVI4 (Streptococcus suis (strain 05ZYH33)) Explore A4VVI4 Go to UniProtKB: A4VVI4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A4VVI4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.286 (Depositor), 0.275 (DCC)
R-Value Work: 0.234 (Depositor), 0.229 (DCC)
R-Value Observed: 0.237 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.69	α = 90
b = 105.69	β = 90
c = 159.572	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystalClear	data collection
CrystalClear	data reduction
CrystalClear	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-11-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-11-11
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.