Download MendeleyStructural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
Pinko, C., Borchardt, A., Nikulin, V., Su, Y.To be published.
3BAA
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
- PDB DOI: https://doi.org/10.2210/pdb3BAA/pdb
- Classification: LIGASE
- Organism(s): Enterococcus faecalis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-11-07 Released: 2008-11-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.216
- R-Value Work: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA ligase | 332 | Enterococcus faecalis | Mutation(s): 0 Gene Names: ligA EC: 6.5.1.2 |  | |
UniProt | |||||
Find proteins for Q837V6 (Enterococcus faecalis (strain ATCC 700802 / V583)) Explore Q837V6 Go to UniProtKB: Q837V6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q837V6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3BA Query on 3BA | G [auth A] | 7-amino-2-tert-butyl-4-{[2-(1H-imidazol-4-yl)ethyl]amino}pyrido[2,3-d]pyrimidine-6-carboxamide C17 H22 N8 O XESUNWBIAADLPI-UHFFFAOYSA-N |  | ||
| NMN Query on NMN | F [auth A] | BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE C11 H16 N2 O8 P DAYLJWODMCOQEW-TURQNECASA-O |  | ||
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | H [auth A], I [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.216
- R-Value Work: 0.187
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.494 | α = 90 |
| b = 86.363 | β = 101.1 |
| c = 56.833 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| CNX | refinement |
Entry History
Deposition Data
- Released Date: 2008-11-11 Deposition Author(s): Pinko, C.
Revision History (Full details and data files)
- Version 1.0: 2008-11-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations
