3B5K | pdb_00003b5k

Crystal structure of murine interleukin-5

PDB DOI: https://doi.org/10.2210/pdb3B5K/pdb

Classification: CYTOKINE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-10-26 Released: 2008-11-04
Deposition Author(s): Mueller, T.D., Patino, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.240 (Depositor), 0.275 (DCC)
R-Value Work:
0.213 (Depositor), 0.247 (DCC)
R-Value Observed:
0.215 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of murine interleukin-5

Patino, E., Kraich, M., Kotzsch, A., Saremba, S., Paschke, A., Sebald, W., Mueller, T.D.

To be published.

Macromolecule Content

Total Structure Weight: 26.14 kDa
Atom Count: 1,795
Modeled Residue Count: 211
Deposited Residue Count: 226
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin-5	A, B	113	Mus musculus	Mutation(s): 6 Gene Names: Il5
UniProt
Find proteins for P04401 (Mus musculus) Explore P04401 Go to UniProtKB: P04401
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P04401
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.240 (Depositor), 0.275 (DCC)
R-Value Work: 0.213 (Depositor), 0.247 (DCC)
R-Value Observed: 0.215 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.193	α = 90
b = 47.085	β = 96.41
c = 55.053	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystalClear	data collection
CrystalClear	data reduction
CrystalClear	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-11-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-11-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2021-11-10
Changes: Database references
Version 1.3: 2023-11-01
Changes: Data collection, Refinement description
Version 1.4: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.