3AY3 | pdb_00003ay3

Crystal structure of glucuronic acid dehydrogeanse from Chromohalobacter salexigens

PDB DOI: https://doi.org/10.2210/pdb3AY3/pdb

Classification: OXIDOREDUCTASE
Organism(s): Chromohalobacter israelensis DSM 3043
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-04-26 Released: 2011-10-26
Deposition Author(s): Ahn, J.-W., Kim, S., Kim, K.-J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.289 (Depositor), 0.285 (DCC)
R-Value Work:
0.215 (Depositor), 0.215 (DCC)
R-Value Observed:
0.218 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3AY3

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of glucuronic acid dehydrogenase [correction of dehydrogeanse] from Chromohalobacter salexigens

Ahn, J.-W., Lee, S.Y., Kim, S., Kim, S.M., Lee, S.B., Kim, K.-J.

(2012) Proteins 80: 314-318

PubMed: 21987458 Search on PubMed
DOI: https://doi.org/10.1002/prot.23167
Primary Citation Related Structures:
3AY3

Organizational Affiliation

Pohang Accelerator Laboratory, Pohang University of Science and Technology, Pohang, Kyungbuk, Korea.

Macromolecule Content

Total Structure Weight: 117.69 kDa
Atom Count: 8,646
Modeled Residue Count: 1,064
Deposited Residue Count: 1,068
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NAD-dependent epimerase/dehydratase	A, B, C, D	267	Chromohalobacter israelensis DSM 3043	Mutation(s): 0 Gene Names: Csal_2474
UniProt
Find proteins for Q1QUN7 (Chromohalobacter israelensis (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)) Explore Q1QUN7 Go to UniProtKB: Q1QUN7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1QUN7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.289 (Depositor), 0.285 (DCC)
R-Value Work: 0.215 (Depositor), 0.215 (DCC)
R-Value Observed: 0.218 (Depositor)

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.762	α = 90
b = 122.762	β = 90
c = 150.476	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-10-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-10-26
Type: Initial release
Version 1.1: 2014-01-29
Changes: Database references
Version 1.2: 2017-10-11
Changes: Refinement description
Version 1.3: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.