35UG | pdb_000035ug

Human DVL2 PDZ domain in complex with Vangl2

PDB DOI: https://doi.org/10.2210/pdb35UG/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2026-05-18 Released: 2026-09-16
Deposition Author(s): Shen, G.B., Yang, H.M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.228 (Depositor), 0.229 (DCC)
R-Value Work:
0.185 (Depositor), 0.186 (DCC)
R-Value Observed:
0.187 (Depositor)

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 35UG

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of a Vangl2-Dvl2 complex reveals a non-canonical PDZ recognition mode in PCP signaling

Shen, G.B., Yang, H.M.

To be published.

Macromolecule Content

Total Structure Weight: 44.56 kDa
Atom Count: 3,253
Modeled Residue Count: 406
Deposited Residue Count: 424
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Segment polarity protein dishevelled homolog DVL-2,Vang-like protein 2	A, B, C, D	106	Homo sapiens	Mutation(s): 0 Gene Names: DVL2, VANGL2, KIAA1215, STB1
UniProt & NIH Common Fund Data Resources
Find proteins for O14641 (Homo sapiens) Explore O14641 Go to UniProtKB: O14641
PHAROS: O14641 GTEx: ENSG00000004975
Find proteins for Q9ULK5 (Homo sapiens) Explore Q9ULK5 Go to UniProtKB: Q9ULK5
PHAROS: Q9ULK5 GTEx: ENSG00000162738
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	Q9ULK5 O14641
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.228 (Depositor), 0.229 (DCC)
R-Value Work: 0.185 (Depositor), 0.186 (DCC)
R-Value Observed: 0.187 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.33	α = 90
b = 52.32	β = 104.21
c = 77.52	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	phasing
XDS	data reduction
XDS	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-09-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81821002

Revision History (Full details and data files)

Version 1.0: 2026-09-16
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.