34XV | pdb_000034xv

Actinomycetes hydrolase (S148A) bound to 2,4-TDA-DEG

PDB DOI: https://doi.org/10.2210/pdb34XV/pdb

Classification: HYDROLASE
Organism(s): Actinomycetes bacterium
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2026-10-12 Released: 2026-10-21
Deposition Author(s): Bloch, Y., Panneerselvam, S.
Funding Organization(s): H2020 Marie Curie Actions of the European Commission

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.15 Å
R-Value Free:
0.169 (Depositor), 0.166 (DCC)
R-Value Work:
0.143 (Depositor), 0.144 (DCC)
R-Value Observed:
0.144 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Crystallographic exploration of urethanases.

Bloch, Y., Panneerselvam, S.

To be published.

Macromolecule Content

Total Structure Weight: 68.62 kDa
Atom Count: 5,675
Modeled Residue Count: 601
Deposited Residue Count: 636
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hydrolase GB7	A, B	318	Actinomycetes bacterium	Mutation(s): 0 Gene Names: MCL8208884 EC: 3.5.1.75
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1KUO( Subject of Investigation/LOI) Query on A1KUO Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	2-(2-hydroxyethyloxy)ethyl ~{N}-[3-[2-(2-hydroxyethyloxy)ethoxycarbonylamino]-4-methyl-phenyl]carbamate C₁₇ H₂₆ N₂ O₈ OLYQPHLZVHXEHK-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.15 Å
R-Value Free: 0.169 (Depositor), 0.166 (DCC)
R-Value Work: 0.143 (Depositor), 0.144 (DCC)
R-Value Observed: 0.144 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.546	α = 90
b = 46.408	β = 102.33
c = 92.851	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
autoPROC	data reduction
STARANISO	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-10-21

Deposition Author(s):

Panneerselvam, S.

Funding Organization	Location	Grant Number
H2020 Marie Curie Actions of the European Commission	European Union	945405

Revision History (Full details and data files)

Version 1.0: 2026-10-21
Type: Initial release