31FZ | pdb_000031fz

Mouse 80S ribosome, eL41 KO

PDB DOI: https://doi.org/10.2210/pdb31FZ/pdb
EM Map EMD-58363: EMDB EMDataResource

Classification: RIBOSOME
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2026-06-02 Released: 2026-09-23
Deposition Author(s): Rabl, J., Valdivia Francia, F., Sendoel, A.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Gm10076 and eL41

Rabl, J., Valdivia Francia, F., Sendoel, A.

To be published.

Macromolecule Content

Total Structure Weight: 3,679.79 kDa
Atom Count: 208,103
Modeled Residue Count: 16,665
Deposited Residue Count: 19,641
Unique protein chains: 74
Unique nucleic acid chains: 4

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL2	A [auth AA]	257	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62918 (Mus musculus) Explore P62918 Go to UniProtKB: P62918
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62918
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL3	B [auth AB]	403	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P27659 (Mus musculus) Explore P27659 Go to UniProtKB: P27659
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P27659
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL4	C [auth AC]	419	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9D8E6 (Mus musculus) Explore Q9D8E6 Go to UniProtKB: Q9D8E6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9D8E6
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL18	D [auth AD]	297	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47962 (Mus musculus) Explore P47962 Go to UniProtKB: P47962
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P47962
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL6	E [auth AE]	296	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47911 (Mus musculus) Explore P47911 Go to UniProtKB: P47911
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P47911
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL13	F [auth AF]	203	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P19253 (Mus musculus) Explore P19253 Go to UniProtKB: P19253
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P19253
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL22	G [auth AG]	184	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CPR4 (Mus musculus) Explore Q9CPR4 Go to UniProtKB: Q9CPR4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CPR4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL18	H [auth AH]	188	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P35980 (Mus musculus) Explore P35980 Go to UniProtKB: P35980
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P35980
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL19	I [auth AI]	196	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P84099 (Mus musculus) Explore P84099 Go to UniProtKB: P84099
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P84099
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL20	J [auth AJ]	176	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62717 (Mus musculus) Explore P62717 Go to UniProtKB: P62717
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62717
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL21	K [auth AK]	160	Mus musculus	Mutation(s): 0
UniProt
Find proteins for O09167 (Mus musculus) Explore O09167 Go to UniProtKB: O09167
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O09167
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL22	L [auth AL]	128	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P67984 (Mus musculus) Explore P67984 Go to UniProtKB: P67984
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P67984
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL14	M [auth AM]	140	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62830 (Mus musculus) Explore P62830 Go to UniProtKB: P62830
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62830
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL24	N [auth AN]	157	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q8BP67 (Mus musculus) Explore Q8BP67 Go to UniProtKB: Q8BP67
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8BP67
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL23	O [auth AO]	156	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62751 (Mus musculus) Explore P62751 Go to UniProtKB: P62751
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62751
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL24	P [auth AP]	145	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P61255 (Mus musculus) Explore P61255 Go to UniProtKB: P61255
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61255
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL27	Q [auth AQ]	136	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P61358 (Mus musculus) Explore P61358 Go to UniProtKB: P61358
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61358
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL15	R [auth AR]	148	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14115 (Mus musculus) Explore P14115 Go to UniProtKB: P14115
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14115
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL29	S [auth AS]	160	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47915 (Mus musculus) Explore P47915 Go to UniProtKB: P47915
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P47915
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL30	T [auth AT]	115	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62889 (Mus musculus) Explore P62889 Go to UniProtKB: P62889
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62889
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL31	U [auth AU]	125	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62900 (Mus musculus) Explore P62900 Go to UniProtKB: P62900
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62900
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL32	V [auth AV]	135	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62911 (Mus musculus) Explore P62911 Go to UniProtKB: P62911
IMPC: MGI:98038
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62911
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL33	W [auth AW]	110	Mus musculus	Mutation(s): 0
UniProt
Find proteins for O55142 (Mus musculus) Explore O55142 Go to UniProtKB: O55142
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O55142
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL34	X [auth AX]	117	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9D1R9 (Mus musculus) Explore Q9D1R9 Go to UniProtKB: Q9D1R9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9D1R9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL29	Y [auth AY]	123	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q6ZWV7 (Mus musculus) Explore Q6ZWV7 Go to UniProtKB: Q6ZWV7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6ZWV7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL36	Z [auth AZ]	105	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47964 (Mus musculus) Explore P47964 Go to UniProtKB: P47964
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P47964
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL37	AA [auth Aa]	97	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9D823 (Mus musculus) Explore Q9D823 Go to UniProtKB: Q9D823
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9D823
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL38	BA [auth Ab]	70	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9JJI8 (Mus musculus) Explore Q9JJI8 Go to UniProtKB: Q9JJI8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9JJI8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL39	CA [auth Ac]	51	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62892 (Mus musculus) Explore P62892 Go to UniProtKB: P62892
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62892
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-ribosomal protein eL40 fusion protein	DA [auth Ad]	128	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62984 (Mus musculus) Explore P62984 Go to UniProtKB: P62984
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62984
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL42	EA [auth Ae]	106	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P83882 (Mus musculus) Explore P83882 Go to UniProtKB: P83882
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P83882
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL43	FA [auth Af]	92	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P61514 (Mus musculus) Explore P61514 Go to UniProtKB: P61514
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61514
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL28	GA [auth Ag]	137	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P41105 (Mus musculus) Explore P41105 Go to UniProtKB: P41105
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P41105
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS28	HA [auth BA]	69	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62858 (Mus musculus) Explore P62858 Go to UniProtKB: P62858
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62858
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS14	IA [auth BB]	56	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62274 (Mus musculus) Explore P62274 Go to UniProtKB: P62274
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62274
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS3	KA [auth BE]	243	Mus musculus	Mutation(s): 0 EC: 4.2.99.18
UniProt
Find proteins for P62908 (Mus musculus) Explore P62908 Go to UniProtKB: P62908
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62908
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS17	LA [auth BH]	135	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P63276 (Mus musculus) Explore P63276 Go to UniProtKB: P63276
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P63276
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS7	MA [auth BJ]	204	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P97461 (Mus musculus) Explore P97461 Go to UniProtKB: P97461
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P97461
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS10	NA [auth BK]	165	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P63325 (Mus musculus) Explore P63325 Go to UniProtKB: P63325
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P63325
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS19	OA [auth BL]	145	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62843 (Mus musculus) Explore P62843 Go to UniProtKB: P62843
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62843
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS9	PA [auth BM]	146	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14131 (Mus musculus) Explore P14131 Go to UniProtKB: P14131
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14131
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS13	QA [auth BN]	152	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62270 (Mus musculus) Explore P62270 Go to UniProtKB: P62270
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62270
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS19	RA [auth BO]	145	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CZX8 (Mus musculus) Explore Q9CZX8 Go to UniProtKB: Q9CZX8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CZX8
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS10	SA [auth BP]	119	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P60867 (Mus musculus) Explore P60867 Go to UniProtKB: P60867
IMPC: MGI:1914677
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P60867
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein RACK1	TA [auth BT]	317	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P68040 (Mus musculus) Explore P68040 Go to UniProtKB: P68040
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P68040
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS12	UA [auth BX]	132	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63323 (Mus musculus) Explore P63323 Go to UniProtKB: P63323
IMPC: MGI:98105
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P63323
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS25	VA [auth Bc]	125	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62852 (Mus musculus) Explore P62852 Go to UniProtKB: P62852
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62852
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-ribosomal protein eS31 fusion protein	WA [auth Bf]	156	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62983 (Mus musculus) Explore P62983 Go to UniProtKB: P62983
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62983
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3a	XA [auth BD]	264	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P97351 (Mus musculus) Explore P97351 Go to UniProtKB: P97351
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P97351
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS4	YA [auth BF]	263	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62702 (Mus musculus) Explore P62702 Go to UniProtKB: P62702
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62702
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS17	ZA [auth BG]	158	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62281 (Mus musculus) Explore P62281 Go to UniProtKB: P62281
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62281
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS2	AB [auth BI]	295	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14206 (Mus musculus) Explore P14206 Go to UniProtKB: P14206
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14206
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS21	BB [auth BQ]	83	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CQR2 (Mus musculus) Explore Q9CQR2 Go to UniProtKB: Q9CQR2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CQR2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS12	CB [auth BR]	143	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62267 (Mus musculus) Explore P62267 Go to UniProtKB: P62267
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62267
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS26	DB [auth BS]	115	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62855 (Mus musculus) Explore P62855 Go to UniProtKB: P62855
IMPC: MGI:1351628
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62855
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS5	EB [auth BU]	293	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P25444 (Mus musculus) Explore P25444 Go to UniProtKB: P25444
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P25444
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS6	FB [auth BV]	249	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62754 (Mus musculus) Explore P62754 Go to UniProtKB: P62754
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62754
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS4	GB [auth BW]	194	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q6ZWN5 (Mus musculus) Explore Q6ZWN5 Go to UniProtKB: Q6ZWN5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6ZWN5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS15	HB [auth BY]	151	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62301 (Mus musculus) Explore P62301 Go to UniProtKB: P62301
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62301
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS11	IB [auth BZ]	151	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62264 (Mus musculus) Explore P62264 Go to UniProtKB: P62264
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62264
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS8	JB [auth Ba]	130	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62245 (Mus musculus) Explore P62245 Go to UniProtKB: P62245
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62245
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS24	KB [auth Bb]	133	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62849 (Mus musculus) Explore P62849 Go to UniProtKB: P62849
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62849
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS27-like	LB [auth Bd]	84	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q6ZWY3 (Mus musculus) Explore Q6ZWY3 Go to UniProtKB: Q6ZWY3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6ZWY3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein	MB [auth Be]	133	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62862 (Mus musculus) Explore P62862 Go to UniProtKB: P62862
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62862
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS7	NB [auth Bg]	194	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62082 (Mus musculus) Explore P62082 Go to UniProtKB: P62082
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62082
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS8	OB [auth Bh]	208	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62242 (Mus musculus) Explore P62242 Go to UniProtKB: P62242
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62242
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL30	PB [auth CA]	270	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14148 (Mus musculus) Explore P14148 Go to UniProtKB: P14148
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14148
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL8	QB [auth CB]	266	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P12970 (Mus musculus) Explore P12970 Go to UniProtKB: P12970
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P12970
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL6	RB [auth CC]	192	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P51410 (Mus musculus) Explore P51410 Go to UniProtKB: P51410
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P51410
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL16-like	SB [auth CD]	214	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P86048 (Mus musculus) Explore P86048 Go to UniProtKB: P86048
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P86048
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL5	TB [auth CE]	178	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CXW4 (Mus musculus) Explore Q9CXW4 Go to UniProtKB: Q9CXW4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CXW4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL13	UB [auth CF]	211	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47963 (Mus musculus) Explore P47963 Go to UniProtKB: P47963
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P47963
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL14	VB [auth CG]	217	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CR57 (Mus musculus) Explore Q9CR57 Go to UniProtKB: Q9CR57
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CR57
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL15	WB [auth CH]	204	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CZM2 (Mus musculus) Explore Q9CZM2 Go to UniProtKB: Q9CZM2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CZM2
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 36
18S rRNA	JA [auth BC]	1,871	Mus musculus
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 76
28S rRNA	XB [auth CI]	4,731	Mus musculus
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 77
5S rRNA	YB [auth CJ]	121	Mus musculus
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 78
5.8S rRNA	ZB [auth CK]	156	Mus musculus
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain AC [auth Aa] SDF format, chain BC [auth Ad] SDF format, chain CC [auth Ae] SDF format, chain DC [auth Af] SDF format, chain EC [auth BB] SDF format, chain FC [auth Bf] SDF format, chain GC [auth BS] MOL2 format, chain AC [auth Aa] MOL2 format, chain BC [auth Ad] MOL2 format, chain CC [auth Ae] MOL2 format, chain DC [auth Af] MOL2 format, chain EC [auth BB] MOL2 format, chain FC [auth Bf] MOL2 format, chain GC [auth BS] mmCIF format, chain AC [auth Aa] mmCIF format, chain BC [auth Ad] mmCIF format, chain CC [auth Ae] mmCIF format, chain DC [auth Af] mmCIF format, chain EC [auth BB] mmCIF format, chain FC [auth Bf] mmCIF format, chain GC [auth BS]	AC [auth Aa] BC [auth Ad] CC [auth Ae] DC [auth Af] EC [auth BB] AC [auth Aa], BC [auth Ad], CC [auth Ae], DC [auth Af], EC [auth BB], FC [auth Bf], GC [auth BS]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain AC [auth Aa] Focus chain BC [auth Ad] Focus chain CC [auth Ae] Focus chain DC [auth Af] Focus chain EC [auth BB] Focus chain FC [auth Bf] Focus chain GC [auth BS] Interactions & Density Focus chain AC [auth Aa] Focus chain BC [auth Ad] Focus chain CC [auth Ae] Focus chain DC [auth Af] Focus chain EC [auth BB] Focus chain FC [auth Bf] Focus chain GC [auth BS]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLZ Query on MLZ	C [auth AC]	L-PEPTIDE LINKING	C₇ H₁₆ N₂ O₂		LYS

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.89 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-09-23

Deposition Author(s):

Rabl, J.

Valdivia Francia, F.

Sendoel, A.

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2026-09-23
Type: Initial release

31FZ | pdb_000031fz

Mouse 80S ribosome, eL41 KO

Literature

Gm10076 and eL41

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Entity ID: 2

UniProt

Entity Groups

Sequence Annotations

Entity ID: 3

UniProt

Entity Groups

Sequence Annotations

Entity ID: 4

UniProt

Entity Groups

Sequence Annotations

Entity ID: 5

UniProt

Entity Groups

Sequence Annotations

Entity ID: 6

UniProt

Entity Groups

Sequence Annotations

Entity ID: 7

UniProt

Entity Groups

Sequence Annotations

Entity ID: 8

UniProt

Entity Groups

Sequence Annotations

Entity ID: 9

UniProt

Entity Groups

Sequence Annotations

Entity ID: 10

UniProt

Entity Groups

Sequence Annotations

Entity ID: 11

UniProt

Entity Groups

Sequence Annotations

Entity ID: 12

UniProt

Entity Groups

Sequence Annotations

Entity ID: 13

UniProt

Entity Groups

Sequence Annotations

Entity ID: 14

UniProt

Entity Groups

Sequence Annotations

Entity ID: 15

UniProt

Entity Groups

Sequence Annotations

Entity ID: 16

UniProt

Entity Groups

Sequence Annotations

Entity ID: 17

UniProt

Entity Groups

Sequence Annotations

Entity ID: 18

UniProt

Entity Groups

Sequence Annotations

Entity ID: 19

UniProt