30YV | pdb_000030yv

Portal-adaptor asssembly of the phage OE33PA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 30YV

This is version 1.0 of the entry. See complete history

Literature

Dynamic adhesion device of phage OE33PA drives Gram-positive host recognition.

Schmitt, L.Chaib, A.Ptchelkine, D.Kandiah, E.Le Marrec, C.Cambillau, C.Goulet, A.

(2026) bioRxiv 

  • DOI: https://doi.org/10.64898/2026.05.20.726473
  • Primary Citation Related Structures: 
    30YS, 30YT, 30YU, 30YV, 30YW, 30YX, 30YY, 30YZ, 30ZA

  • PubMed Abstract: 

    Bacteriophages (phages) infecting Gram-positive bacteria must bind to host receptors across thick cell walls to initiate infection, yet the underlying structural mechanisms remain unclear. Here, we report cryo-electron microscopy structures of the Oenococcus oeni siphophage OE33PA, providing the first atomic resolution view of a phage infecting this bacterium important for the wine industry. While the overall virion architecture is conserved, the adhesion device displays distinctive features. Its receptor-binding proteins adopt multiple orientations, revealing an intrinsically dynamic assembly. In situ cryo-electron tomography captures distinct conformations upon host attachment, providing rare structural insight into interactions with Gram-positive hosts. Additionally, functional assays show that a highly mobile carbohydrate-binding module in the distal tail protein mediates host-specific binding. Furthermore, the tape measure protein, central to phage assembly and infectivity, adopts a hexameric organization, updating the prevailing trimeric model in siphophages. Together, these findings reveal a dynamic adhesion device in a phage infecting Gram-positive bacteria and highlight the structural and functional diversity of phages.

Macromolecule Content 

  • Total Structure Weight: 663.05 kDa 
  • Atom Count: 39,089 
  • Modeled Residue Count: 5,064 
  • Deposited Residue Count: 6,048 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
portal protein389Oenococcus phage phiOE33PAMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
adaptor protein115Oenococcus phage phiOE33PAMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX2.0_5936
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-21-CE11-0018-01
Agence Nationale de la Recherche (ANR)FranceANR-10-INSB-05-02
Agence Nationale de la Recherche (ANR)FranceANR-17-EURE-0003

Revision History  (Full details and data files)

  • Version 1.0: 2026-06-17
    Type: Initial release