30OG | pdb_000030og

HIV-1 CA tri-hexamer interface


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 30OG

This is version 1.0 of the entry. See complete history

Literature

MX2 Mediates Collapse of the HIV-1 Capsid.

Goodale, A.Huang, S.W.Almeida, N.Williamson, D.J.Shkriabai, N.Betancor, G.Apolonia, L.DiMaio, F.Padilla-Parra, S.Kvaratskhelia, M.Bergeron, J.R.C.Malim, M.H.

(2026) bioRxiv 

  • DOI: https://doi.org/10.64898/2026.05.07.723526
  • Primary Citation Related Structures: 
    30OD, 30OE, 30OF, 30OG

  • PubMed Abstract: 

    The HIV-1 capsid core encapsulates the viral genome and mediates its delivery into the host cell's nucleus. It is composed of multiple copies of the Capsid (CA, p24 Gag ) protein, assembled into hexamers and pentamers to create a lattice that forms a fullerene-like cone. Myxovirus resistance 2 (MX2) is an HIV-1 restriction factor that binds to the capsid core and blocks nuclear import of the viral genome. Here, we define a minimal region of MX2 required for HIV-1 restriction and produce a corresponding functional recombinant protein. We have used cryo-electron microscopy to determine the structure of this MX2 fragment bound to the tri-hexamer interface of the capsid lattice, revealing a large, buried interface combining electrostatic and hydrophobic interactions. This structure, together with assays that measure capsid core destabilisation, shows that MX2 binding induces conformational rearrangements in the capsid lattice that culminate in a loss of integrity. These results support a model whereby MX2 exerts its antiviral activity by disrupting the capsid lattice, inducing premature fragmentation and preventing HIV-1 nuclear import. By revealing the structural basis for MX2-mediated restriction, this work also provides the framework for the development of anti-HIV molecules that mimic MX2 restriction.


  • Organizational Affiliation
    • Randall Centre for Cell and Molecular Biophysics, King's College London, London, UK.

Macromolecule Content 

  • Total Structure Weight: 154.57 kDa 
  • Atom Count: 9,218 
  • Modeled Residue Count: 1,178 
  • Deposited Residue Count: 1,392 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
HIV-1 CA232HIV-1 group MMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Human Frontier Science Program (HFSP)FranceRGY0080/2021
Medical Research Council (MRC, United Kingdom)United KingdomMR/W006820/1

Revision History  (Full details and data files)

  • Version 1.0: 2026-06-24
    Type: Initial release