2LL4 | pdb_00002ll4

HADDOCK structure of TgMIC4-A5/lacto-N-biose complex, based on NOE-derived distance restraints


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2LL4

This is version 2.1 of the entry. See complete history

Literature

Galactose Recognition by the Apicomplexan Parasite Toxoplasma gondii.

Marchant, J.Cowper, B.Liu, Y.Lai, L.Pinzan, C.Marq, J.B.Friedrich, N.Sawmynaden, K.Liew, L.Chai, W.Childs, R.A.Saouros, S.Simpson, P.Roque Barreira, M.C.Feizi, T.Soldati-Favre, D.Matthews, S.

(2012) J Biological Chem 287: 16720-16733

  • DOI: https://doi.org/10.1074/jbc.M111.325928
  • Primary Citation Related Structures: 
    2LL3, 2LL4, 4A5V

  • PubMed Abstract: 

    Toxosplasma gondii is the model parasite of the phylum Apicomplexa, which contains numerous obligate intracellular parasites of medical and veterinary importance, including Eimeria, Sarcocystis, Cryptosporidium, Cyclospora, and Plasmodium species. Members of this phylum actively enter host cells by a multistep process with the help of microneme protein (MIC) complexes that play important roles in motility, host cell attachment, moving junction formation, and invasion. T. gondii (Tg)MIC1-4-6 complex is the most extensively investigated microneme complex, which contributes to host cell recognition and attachment via the action of TgMIC1, a sialic acid-binding adhesin. Here, we report the structure of TgMIC4 and reveal its carbohydrate-binding specificity to a variety of galactose-containing carbohydrate ligands. The lectin is composed of six apple domains in which the fifth domain displays a potent galactose-binding activity, and which is cleaved from the complex during parasite invasion. We propose that galactose recognition by TgMIC4 may compromise host protection from galectin-mediated activation of the host immune system.


  • Organizational Affiliation
    • Division of Molecular Biosciences, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.

Macromolecule Content 

  • Total Structure Weight: 9.54 kDa 
  • Atom Count: 566 
  • Modeled Residue Count: 70 
  • Deposited Residue Count: 82 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Micronemal protein 4A [auth M]82Toxoplasma gondiiMutation(s): 0 
Gene Names: MIC4TgIb.0680
UniProt
Find proteins for Q9XZH7 (Toxoplasma gondii)
Explore Q9XZH7 
Go to UniProtKB:  Q9XZH7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9XZH7
Sequence Annotations
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Reference Sequence

Oligosaccharides

Help  
Entity ID: 2
MoleculeChains Length2D Diagram GlycosylationD Interactions
beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranoseB [auth A]2N/A
Glycosylation Resources
GlyTouCan: G00056MO
GlyCosmos: G00056MO
GlyGen: G00056MO

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-04-04
    Type: Initial release
  • Version 1.1: 2012-05-30
    Changes: Database references
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary
  • Version 2.1: 2024-10-16
    Changes: Data collection, Database references, Structure summary